MGL #1

Portnoy, D. S., Hollenbeck, C. M., Vidal, R. R., and Gold, J. R. (2014) A comparison of neutral and immune genetic variation in Atlantic salmon, Salmo salar L., exposed to the ISA virus in Chilean aquaculture facilities. PLoS ONE 9(6):e99358. PDF

 

MGL #2

Portnoy, D. S., Hollenbeck, C. M., Johnston, J. S., Casman, H. M., and Gold, J. R. (2014) Parthenogenesis in a reef whitetip shark, Triaenodon obesus, involves a reduction in ploidy. Journal of Fish Biology 85: 502-508. PDF

 

MGL #3

Puritz, J. B., Hollenbeck, C. M., and Gold, J. R. (2014) dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms. PeerJ 2:e43. PDF

 

MGL #4

Puritz, J. B., Renshaw, M. A., Vera, R. R., Abrego, D., and Gold, J. R. (2014) Reproductive variance of brood dams and sires used in restoration enhancement of spotted seatrout (Cynoscion nebulosus) in Texas bays and estuaries. North American Journal of Aquaculture 76: 407-414. PDF

 

MGL #5

Portnoy, D. S., Hollenbeck, C. M., Belcher, C. N., Driggers, W. B. III, Frasier, B. S., Gelsleichter. J., Grubbs, R. D., and Gold, J. R. (2014) Contemporary population structure and post-glacial genetic demography in a migratory marine species, the blacknose shark, Carcharhinus acronotus. Molecular Ecology 23: 5480–5495. PDF

 

MGL #6

Hollenbeck, C. M., Portnoy, D. S., and Gold J. R. (2015) A genetic linkage map of red drum (Sciaenops ocellatus) and comparison of chromosomal syntenies with four other fish species. Aquaculture 435: 265-274. PDF

 

MGL #7

Hollenbeck, C. M., Portnoy, D. S, Saillant, E., and Gold, J. R. (2015) Population structure and genetic demography of red snapper (Lutjanus campechanus) in the U.S. South Atlantic and connectivity with red snapper in the Gulf of Mexico. Fisheries Research 172: 17-25. PDF

 

MGL #8

Giresi, M. M., Grubbs, R. D., Portnoy, D. S., Driggers III, W. B, Jones, L., and Gold, J. R. (2015). Identification and distribution of morphologically conserved smoothhound sharks (Genus Mustelus) in the Northern Gulf of Mexico. Transactions of the American Fisheries Society 144:1301–1310. PDF

 

MGL #9

Gold, J. R., Willis, S. C., Renshaw, M. A., Buentello, A., Walker, H. J., Puritz, J. B., Hollenbeck, C. M., and Voelker, G. (2015). Phylogenetic relationships of tropical eastern Pacific snappers (Lutjanidae) inferred from mitochondrial DNA sequences. Systematics and Biodiversity 13(6): 916-927. PDF

 

MGL #10

Portnoy, D. S., Puritz, J. B., Hollenbeck, C. M., Gelsleichter, J., Chapman, D., and Gold, J. R (2015).  Selection and sex-biased dispersal in a coastal shark: the influence of philopatry on adaptive variation.  Molecular Ecology 24: 5877–5885. PDF

 

MGL #11

Hollenbeck, C.M., Portoy, D.S., and Gold, J.R. (2016).  A method for detecting changes in contemporary effective population size from linkage disequilibrium at linked and unlinked loci.  Heredity 117: 207-216. PDF  

 

MGL #12

Portnoy, D.S., Hollenbeck, C. M., Bethea, D. M., Frazier, B. S., Gelsleicther, J., Gold, J. R.  (2016). Population structure, gene flow, and historical demography of a small coastal shark (Carcharhinus isodon) in U.S. waters of the western Atlantic Ocean.  ICES Journal of Marine Science. DOI: 10.1093/icesjms/fsw098 PDF

 

MGL #13

Puritz, J. B., Portnoy, D. S., Gold, J. R.  (2016). Fine-scale partitioning of genomic variation among recruits in an exploited fishery: causes and consequences.  Scientific Reports 6:36095. PDF

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MGL #14

Hollenbeck, C. M., Portnoy, D. S., Wetzel, D., Sherwood, T. A., Samollow, P. B., and Gold, J. R. (2016).  Linkage mapping and comparative genomics of red drum (Sciaenops ocellatus) using next-generation sequencing. G3: Genes, Genomes, Genetics.  DOI:10.1534/g3.116.036350 PDF

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MGL #15

Portnoy, D. S., Willis, S. C., Hunt, E., Swift, D. G., Gold, J. R., and Conway, K. W.  (2017).  Molecular phylogenetics of New World searobins (Triglidae; Prionotinae).  Molecular Phylogenetics and Evolution 107 (2017) 382–387. PDF

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MGL #16

Willis, S. C., Hollenbeck, C. M., Puritz, J. B., Gold, J. R., and Portnoy, D. S. (2017).  Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage.  Molecular Ecology Resources.  DOI: 10.1111/1755-0998.12647 PDF

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MGL #17

Barker, A. M., Frazier, B. S., Bethea, D. M., Gold, J. R., and Portnoy, D. S. (2017) Identification of young-of-the-year great hammerhead shark Sphyrna mokarran in northern Florida and South Carolina.  Journal of Fish Biology. DOI:10.1111/jfb.13356  PDF

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MGL #18

O’Leary, S.J., Hollenbeck, C.M., Vega, R.R, Gold. J.R., Portnoy. D.S. (2018). Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigma, BMC Genomics,19:163. PDF

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MGL #19

O’Leary, S.J., Puritz, J.B., Willis^, S.C., Hollenbeck, C.M., Portnoy D.S. (2018) These aren't the loci you're looking for: Principles of effective SNP filtering for the molecular ecologist. Molecular Ecology, 27, 3193-3206. PDF

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MGL #20

Hollenbeck, C.M., Portnoy, D.S., Gold, J.R. (2019) Evolution of population structure in an estuarine-dependent, marine fish. Ecology and Evolution, 9(6), 3141-3152. PDF

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MGL #21

Barker, A.M., Adams, D.H., Driggers, W.B. III, Frazier, B.S., Portnoy, D.S. (2019) Hybridization between sympatric hammerhead sharks in the western North Atlantic. Biology Letters, 15, 20190004. PDF

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MGL #22

Dimens, P.V., Willis, S.C^, Grubbs, R.D., Portnoy D.S. (2019) A genomic assessment of movement and gene flow around the South Florida vicariance zone in a migratory coastal shark. Marine Biology,166(7), 86. PDF
 

MGL #23

Barker, A.M., Frazier, B.S., Gelsleichter, J., Grubbs, R.D., Hollenbeck, C.M. and Portnoy, D.S. (2019) High rates of genetic polyandry in the blacknose shark, Carcharhinus acronotus. Copeia, 107(3), 502-508. PDF

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MGL #24

Swift, D.G., Portnoy, D.S. (2021) Identification and delineation of essential fish habitat for elasmobranchs in estuaries on the Texas Coast. Estuaries and Coasts, 44, 788-800. PDF

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MGL #25

Osborne, M., Portnoy, D.S., Fields, A.T., Bean, M., Hoagstrom, C.W., Conway, K.W. (2021) Under the radar: genetic assessment of Rio Grande Shiner (Notropis jemezanus) and Speckled Chub (Macrhybopsis aestvalis), two Rio Grande endemic cyprinids that have experienced recent range contractions. Conservation Genetics, 22, 187-204. PDF

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MGL #26 

Hunt, E.P., Conway, K.W., Hamilton, K., Hilton, E.J., Piller, K., Wright, J.J., Portnoy, D.S. (2021) Molecular phylogenetics of the chub suckers (Teleostei: Catostomidae: Erimyzon) inferred from nuclear and mitochondrial loci: Ichthyology and Herpetology, 109, 626-635. PDF

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MGL #27

Barker, A.M., Frasier, B.S., Adams, D.H., Bedore, C.N., Belcher, C.N., Driggers III, W.B., Galloway, A.S., Gelsleichter, J., Grubbs, R.D., Reyier, E.A., Portnoy, D.S. (2021) Distribution and relative abundance of scalloped (Sphyrna lewini) and Carolina (S. gilberti) hammerheads in the western North Atlantic Ocean. Fisheries Research, 242, 106039. PDF

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MGL #28

O’Leary, S.J., Hollenbeck, C.M., Vega, R.R., Portnoy, D.S. (2021) Disentangling spatial, environmental, and demographic signals in population genomics of an exploited, estuarine-dependent flatfish. Ecology and Evolution, 11, 13415-13429. PDF

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MGL #29

Weber, D.N, Fields, A.T., Patterson W.F. III, Barnett, B.K., Hollenbeck, C.M., Portnoy, D.S. (2021) Novel epigenetic age estimation in wild-caught Gulf of Mexico reef fishes. Canadian Journal of Fisheries and Aquatic Sciences. 79(1): 1-5. PDF

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MGL #30

Portnoy, D.S., Fields, A.T., Purtiz, J.B., Hollenbeck, C.M., Patterson, W.F. III (2021) Population genomic analysis of northern red snapper structuring in the U.S. Atlantic and Gulf of Mexico. ICES Journal of Marine Science, 2021;, fsab239. PDF

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MGL #31 

Dahl, K.A., Fields, A., Robertson, A., Portnoy, D.S., Grieme#, A., Lockridge, G., Patterson, W.F. III (2022) Factors affecting DNA barcoding classification accuracy for piscine prey: an experimental assessment with invasive lionfish. Journal of Experimental Marine Biology and Ecology, 547, 151675. PDF

 

MGL #32

Willis, S.C., Puritz, J.B., Hollenbeck, C.M., Portnoy D.S. (2022) Genetic recruitment patterns are

patchy and spatiotemporally unpredictable in a deep-water snapper (Lutjanus vivanus) sampled in fished and protected areas of western Puerto Rico. Conservation Genetics, 23, 435-447. PDF

 

MGL #33

O’Leary, S.J., Hollenbeck, C.M., Vega, R.R., Fincannon, A., Portnoy, D.S. (2022) Effect of spawning success and rearing-environment on genome-wide variation of red drum in a large stock-enhancement program. Aquaculture, 560, 738539. PDF

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MGL #34

Swift, D.G., O’Leary, S.J., Grubbs, R.D., Frazier, B.S., Gardiner, J.M., Drymon, J.M., Bethea, D.M., Wiley, T.R., Portnoy, D.S. (2023). Philopatry influences the genetic population structure of the blacktip shark (Carcharhinus limbatus) at multiple spatial scales. Molecular Ecology, 32, 4953-4970. PDF

 

MGL #35

Hunt, E.P, Willis, S.C., Conway, K.W., Portnoy, D.S. (2023) Interrelationships among species of the New World genus Sphoeroides (Tetraodontiformes: Tetraodontidae) inferred using ultra-conserved DNA elements. Molecular Phylogenetics and Evolution, 189, 107935. PDF

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MGL #36

Fields, A. T., Hunt, E. P., Lanoue, K., Baxter, A. S., Sebby, R. S., Tarkington, W. J., & Portnoy, D. S. (2024). Development, verification, and implementation of an eDNA detection assay for emydids with a case study on diamondback terrapins, Malaclemys terrapin, and red eared slider, Trachemys script elegans. Conservation Genetics Resources, 1-11. PDF

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MGL #37

Weber, D. N., Fields, A. T., Chamberlin, D. W., Patterson III, W. F., & Portnoy, D. S. (2024). Epigenetic age estimation in a long-lived, deepwater scorpionfish: insights into epigenetic clock development. Canadian Journal of Fisheries and Aquatic Sciences, (ja). PDF

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